Survival statistics
sit_survival.Rd
Compute the Probability of Daily Survival (PDS), the Average Life
Expectancy ALE
, Recapture Rate RR
, Survival Rate SR
), by
population (by default, unless pool = TRUE
)
Usage
sit_survival(
x,
pool = FALSE,
spatial_adjustment = TRUE,
following_releases,
following_days,
species = NULL
)
Arguments
- x
A
sit
object.- pool
Logical. Whether to aggregate data from released populations.
- spatial_adjustment
Logical. Whether to adjust observations to account for a irregular spatial arrangement of traps.
- following_releases
A
sit_release
object with a subset of release events or missing (default) for all point release events. Use in combination withfollowing_days
to filter surveys of the target populations within a given number of days after release. Note that counts of wild populations will always be included in the results with a value ofNA
inpop_col
.- following_days
Integer or missing (default). Number of days after releases to return, if
following_releases
is not missing.- species
a character vector of species to be returned. Defaults to
NULL
, which ignores the species variable.
Examples
(surv_prototype <- sit_survival(sit_prototype))
#>
#> ── Survival ────────────────────────────────────────────────────────────
#>
#>
#> population N_released PDS ALE RRx1e3 SR
#> ----------- ----------- ----- ----- ------- -----
#> blue 10000 0.81 4.83 1.96 0.81
#> red 10000 0.81 4.83 1.76 0.82
#> yellow 10000 0.81 4.83 1.38 0.82
#>
plot(surv_prototype)